Scaffold Ga0114996_10275967

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10275967
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1324
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F006919	Metagenome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_102759671	F002715	AGGA	MPEELQSVKLEVGLLKNEVEVRGKQIESLLQKLDLTADKLQELTIEIKTLNARQGDNLRHTTTMSDEFKILHTRIGDLYDKHLIMQKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD*
Ga0114996_102759672	F000245	AGGA	MKTFTRFKESKLDDRLDKIVSNEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRKMTPPSKKGTMAFNYQLEDK*
Ga0114996_102759673	F006919	GGAGG	MKSFVQHLKEFAIKSTSTLVFEVGSQGQGSSALKIPISGPMFKRIWPDTIRATVFHVLDAEDIYDLKKLEGKRKSISAFFSMMAKQMESGIAGGGGVVAELEADVLVSARDDIMSQVDKAGRRWVEMSWFENAAGRGDGAGFQAVERELNVLIRDLVLKHLEPILGDKARTEQEFYLWADMKRHLKDSKKLNLVIKDYFDGVEK