Scaffold Ga0114996_10234215

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114996_10234215

Scaffold Ga0114996_10234215

Overview

Basic Information
Taxon OID	3300009173 Open in IMG/M
Scaffold ID	Ga0114996_10234215 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1463
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.2588	Long. (^o)	-156.0227	Alt. (m)		Depth (m)	208
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081887	Metagenome	114	Y
F082712	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_102342151	F082712	N/A	MDQNKENNKKWEKVRIFDNYEDANELRCVMKDNDDTGLLEVKIYRCGEDGSQFKVKKHLPKPQV*
Ga0114996_102342153	F081887	GGA	MRIEKNTICYTSEVGHNNFWYPTKDKVLIMENCDVQKVAWISGGSKIPLRVLKSCLMPINITENTTKNISPPTKNSYTIVWIEKCFTN*

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