Scaffold Ga0114996_10183328

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10183328
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1700
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045695	Metagenome / Metatranscriptome	152	Y
F061900	Metagenome / Metatranscriptome	131	N
F084706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_101833283	F084706	GGAGG	MKAPEIGTTLGKCVFDNGIIVEGQSLRSQYATLRSGRWICGECLLDMLPLALEATQSHMIEEAEKRDILLAEVKKYGWSVNPATGKLEKL*
Ga0114996_101833284	F061900	GGAG	MTDSSSEEDIEMASELIEAKMALGQARNQMTHMLRMGNFHLEIVPNKHIDVEKFFEKTMNNIWDRFGKDSLEVKVSGMEGMKPKDAGGMHQ*
Ga0114996_101833285	F045695	N/A	MRDKRQLFLNIWNKKNCSTKDSIKAKLKNRGVEPTELNCYEYWMGYIRPWADTRGNIEHVNPFRNEAFMRSIGRNKYGTPFRMANGNKKKKRKFRK*