Scaffold Ga0114996_10177232

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10177232
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1736
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010274	Metagenome / Metatranscriptome	306	Y
F016455	Metagenome / Metatranscriptome	247	Y
F077192	Metagenome / Metatranscriptome	117	Y
F092861	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_101772322	F092861	GGAGG	MMRSELIARLNTVRHEIETTGIKCNNYNLETIEACLYYFIDHEDADPHWE*
Ga0114996_101772324	F077192	AGG	MSSFENVARNQNRFRKVSGRKRTSWMDKMTPQGQAIYCAEFVENAAGFNPELELVED*
Ga0114996_101772325	F016455	GAGG	MSNQELTTLSMWHVYTGNGGSADFETFYGHSRINQKLLVKVAKGKALLSRSL*
Ga0114996_101772326	F010274	GAGG	MKRRAEILNALEKMVNDLYEVGNDEAQYYEEIIGETMDIVMEYDE*