Scaffold Ga0114996_10097715

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10097715
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2500
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F012463	Metagenome	280	Y
F014127	Metagenome	265	Y
F105509	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_100977151	F014127	N/A	MEEGTTMQQRINNTLGRIMITEGDASWDYGFLESLQEQMTKGHNLSPRQQEVLQQIEGRYSDEALKSRASWATTWNEDQEAKFNIALQYYRKTGYYGNVVWKYLTTAGVRCAGAPSEKEYNKLVLNKYAAGVIRNIQGESKFPVGGTAVFRTGARTNRGKPCVILKHGTEEHVNSHAKGAKPIQVLPIGSAEPYWTEERWLKKAKKKK*
Ga0114996_100977153	F012401	GGAGG	MNEELLLALINGNVFHLEKSALERLTQDRLASGSLGQDLESMLYEAGVCWDSLNREYFSIDTFQRETFERLIAEYASQDYA*
Ga0114996_100977156	F012463	GGAG	VKVGDIVKLIAEPQVDWMFNYLEQTFQVLDFPTENGVELKMIGTVPDWIWIIGKDNLELTDEEG*
Ga0114996_100977157	F105509	GAGG	VNIGDLVLAEDGQTAILLTEPRLYDTNIDEDDPYYVAEVYLTEFGRKEVWITDDLEIISEGR*