Scaffold Ga0114996_10082427

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10082427
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2777
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007771	Metagenome / Metatranscriptome	345	Y
F018265	Metagenome / Metatranscriptome	236	Y
F026028	Metagenome / Metatranscriptome	199	Y
F063775	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_100824271	F026028	AGGA	MSICTNCNHRVTISRAIEVGQLWNNEPFIGVVCSDKCKEEIEKKVADGTWMVMRPFPVREYDDDGLPKAITDKQFGVE*
Ga0114996_100824272	F063775	N/A	MIMKIDMSLNRSLDELLSSYWEFRDSDEVKTEEEESEFGALQDCLDGNFGFVSHLM*
Ga0114996_100824274	F018265	N/A	MSIELHTLRAVKITQNIFELQKVNREIMEVKKIVTMLENRKAELETWM*
Ga0114996_100824275	F007771	GGA	METIIHAKNIDKKVRLALYGMLHHSATKLFPRRMKHVSIKLHLKHYVFDGVAMIEEDTPIINPRNFKIIIDPYRLEKDDWERERNYSEWVSELLRTLAHEMVHVKQYVMSELTFKKGQMCWKKQKVDFKSEDDYYCSPHEVEAYGKEKWLQLGYTTTWNKIETEKENG*