Scaffold Ga0114996_10040711

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10040711
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4310
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F038421	Metagenome	166	N
F056907	Metagenome	137	N
F074138	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_1004071112	F038421	N/A	MFKYCPKIERICAFCGEANWNPMKDEKTDEPVLFCGVATGYETRVSSLPECWLKMTSAMQTKYRKQKRAEYEALNPKKLDYKVIGTKRYKKSY*
Ga0114996_100407115	F021867	N/A	VAGLKEYINKKDNTMDNNVEQVDWDKVNRGKVRYGFALELYKKGGELTPSGMGRIEAFVDFVMGDIEEEPVEEKRQSKLMSEGECKEIIKTESEGSKAFVKAMVHVDAEGLEDDDLEKVLQALKTGKINMDNLQASLDKIYTIKQSYK*
Ga0114996_100407116	F056907	N/A	MSGNAYYIPGDTGAGTKLPVGEYEATITALDVVDDVICGKFIADIFKPVYTVKHRDYPRADIKDNGIFRYKEKPGYSYKPSRNWGFAKFCGILNLEQKDGDRITLPYLKVDMMDGFRVVIEVSYKNFVNESGNPVRYPVGTLKKKVGEVPF*
Ga0114996_100407117	F074138	GGAGG	MDWSQLYIHPSDDTTEDDIRDFVEWVSRKAERLGFRVELKLHQKVESTSSETVSHNPLDKSNETY*