Scaffold Ga0114996_10033393

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10033393
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4881
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F006146	Metagenome / Metatranscriptome	380	Y
F097510	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_1003339311	F004843	AGGA	MIIRIIAISLLMMILTGCARDATAEDSTEVTPAQQSLERTTLAETTVQWVAIVMTWNPVIYTIDKEFTSEADCWNYYNTGTGEGDMRSRYGTQVLDHQGNKPDKDYMKKHRPAHRVYPTRMYKGADGWSKGLIWLTCDTK*
Ga0114996_1003339313	F097510	AGGAG	MFNPIRVVWELIEFGIQALFVYVLVILIFIGIIATILYKEKNKEQDWNKAIKKAKIDYIQECTRVDGCRIRKDGTIEW*
Ga0114996_100333938	F006146	N/A	MIIPTATLLMVNALIFSWIAFTSPESCPRKYRVTTENGGLLVNAADVHRYCDIDYGGKFVLKDEYTDEQGDG*