Scaffold Ga0114996_10025004

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114996_10025004

Scaffold Ga0114996_10025004

Overview

Basic Information
Taxon OID	3300009173 Open in IMG/M
Scaffold ID	Ga0114996_10025004 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5861
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.2588	Long. (^o)	-156.0227	Alt. (m)		Depth (m)	208
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038418	Metagenome	166	Y
F038716	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_100250041	F038716	N/A	MPKSTSHIEIAKIKTELGHIKKELCSIKDEQKKLSAYANMGKGGLKVIIVIGYFIAIAVGWFVGQR*
Ga0114996_100250049	F038418	GGAGG	MTDKNEQWIWFINKYNPKRISRITLGKFLKDINKGLTSVNTSIENTKYCFLTQMNFNKPYIFFCTNKDAMKWIARNDK*

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