Scaffold Ga0114996_10022618

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10022618
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6248
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024655	Metagenome / Metatranscriptome	205	Y
F030560	Metagenome / Metatranscriptome	185	Y
F030879	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_1002261812	F030560	AGGAGG	MAQQTFAGVPTEFTAGEVLSSSDQNLLRNYLIAQIKEGMTGDTGEILPMIMDLTNNRIVLDSGGLEFSDGSLQTVAASSDPADMNLIVGLEMFL*
Ga0114996_100226185	F030879	GGAGG	MAKKQKYEYTVCGNHAVHGNEPGSTFSSDMSDEDAQRLIDGGHLTGGKRPQEG*
Ga0114996_100226187	F024655	GGGGG	MKNSMKITLRILHDGTERTVTAGPAAIVAFERKHKIGIGEAMAQVKVEHIAWLAHQAAWREAKAGDGPAVKPFDDWLDDLEDIEAVAEDDAAPLVGTP*