Scaffold Ga0114996_10016212

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10016212
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7704
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019030	Metagenome	232	Y
F044733	Metagenome	154	N
F081754	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_1001621213	F081754	GGA	MRKATTQYGNPVTVLSWRQLPNGWEVWQLEDADPDGIFYSYVEGNESEFGLSSLKELESVITLCAEGDELDGLDPPIGWEWDSCKIFN*
Ga0114996_1001621215	F019030	N/A	LKENKMSKEHIDSRKTYAVQRNTLEAIGIELIIAQREYDKQLNSHTHLITGEWELAQSDKVFYEEQIEYLNGLINHLNEVTNNELLLIGKP*
Ga0114996_100162122	F044733	AGGA	MDKSKRMISGVNTLVTIKSVKLDPNSKAYKKAIANSKGVLTGNPDIYQDTTKIMNTKLARKLGYVK*