Scaffold Ga0114996_10009136

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10009136
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10913
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (64.29%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F017933	Metagenome / Metatranscriptome	238	Y
F024225	Metagenome	207	Y
F029595	Metagenome	188	Y
F036475	Metagenome	170	N
F037479	Metagenome / Metatranscriptome	168	Y
F071255	Metagenome / Metatranscriptome	122	Y
F104046	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_1000913611	F029595	N/A	MKCFESPSGMKDTMLWHKRQSIRDFIKQKPMFSQLMQASKQCMRDNPHLKNDVKGAIQCETIHPQTLSSFSNFTFHTHPHNIPYPSEVDKKTTKELKKKYLLIGVVPQNKTYVFTDDDNFSKSIATI*
Ga0114996_1000913612	F015413	AGG	MQSSDLEKQVNDLLTTKFEQPEFEQLLPRGILGKDMLIGSAGTALSVQMGNIVGKFLPLGQLPSGTASILAGILMQKFGGSSGTLKKLSEGIIQGGIATAMTPFISGLIPSFNQEVKETTQELNPMVKGVMW*
Ga0114996_1000913613	F012639	AGGAG	MSSNNSGLVLNCTANYAIAAPIATVSPCVLQTSPVVAGVNELQVPLTENWIATDVYILATGNAAGNPTAVDPVITMDKNRGRILVQTPPLSAMLITSNTRPRFSPQPIGFEGGSIVRMFATSTVLNAGVASNVQFSVAISIV*
Ga0114996_1000913617	F104046	GGA	MLNKTVEWNTHTLSAGVPVFGFNTKQTFNPQPLDNVFDTGGFDNINPNKFRGKRTQGELNFQQYQGHNVNFSQPYHAPQNNNSWENNILWVRNPYRNYQLRNRG*
Ga0114996_1000913619	F037479	AGG	MKFLGMWNLGGGGTETVLGVANFNLPSHTENVCYNEKTMFSGQITNLSRELIHVTVNGFGSAQSFHRHDLRAYESLTLKNIPIASMSIYVPPTLSCGVHGMGSLVECEDEDEYSISLAKSSMTEALPNSPQFNTDSYTRIAVAAIQTADIIASGTLNDYALYKLTVSADAAQTIDIFWTNAANGNVQFITRIDLAGAGTYSIDFDPAYLRNPNRQGGKLRYTTITAAQTVIDSIGHIVLEGQ*
Ga0114996_1000913620	F017933	GAGG	MQEIILGISLIGFSTMIGISLFNSRKNDTLIRNLCERIAKLEGMLEAKLK*
Ga0114996_100091364	F036475	N/A	MQKLTLDILNDCMGIVEKRVTNPVYKQVIVKMGYPYAKKEILRTSDEELKKDMNLVYNRLKKHFSKKQLKDEIDFSNSISDIKVPKFLSEQVGDYF*
Ga0114996_100091365	F024225	N/A	MEQDNWEINIRTLADFKWNFYDKNIKNLSKKMPHGVTGNNVIECYVSDENNRMYYLQNMMVICHELSHMILKIYYPQIRGKLTHDDTWGKSGEERNFFSTEIHNRVYEGKTRKFTTWHDREYYFYGVDIDDITNKRNINNGF*
Ga0114996_100091366	F071255	N/A	MEETDFAKLSTGLKEGLSEEFSTLKGTINDLSDKMNLSEKEKDGMTNVSEFVDHLNTCDNENCEIHKAQDTLNNNNYMKGFLLGAKFGKQKRN*