Scaffold Ga0114995_10195428

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10195428
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1124
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013135	Metagenome	274	Y
F031664	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_101954281	F013135	AGAAGG	MADVQLSEEALKFIEESKKNINKVKPVNSGLITNPDEKDFNFWNTAGRLTLSAGQGIVNAVEEQGDFLDENIVSLGGLSFGDGDGKTELKDFIPKYVTPKKWKEGGYSQQRNLPVFHKPEGIGENLTEGAARFVTGFIGTSKILKGVGLGGNIIKTGLRGMTAGAVADLTVFDPNEGRLS
Ga0114995_101954282	F031664	N/A	GSKTISGKREKAFATLKQRVLTESIGHDTFVRKIEQGNKFYTYQTEQKKLLEGTFFNAFDASFNKDVNKERAVESSLEYDSRIDLYVQSNPDATYNEQQQYARQLRLDLVDKYEEVSIQQITAFNLEENKFNVIRETSNVISLYEQYQTDPSQKNILITMARLNGYVDEKGKPQVNKFFNDYIEILKSRQEG*