Scaffold Ga0114995_10017982

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10017982
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4270
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030877	Metagenome	184	N
F032042	Metagenome	181	N
F033958	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1001798213	F032042	N/A	VGLGEMMNKLYFSIGDSVMSRWGEAKIVRMDITSFGEPKYGDSVSNVPIDYNGPWIADLDNGHWAYGSQISLLQGHNEYA*
Ga0114995_100179822	F030877	GAGG	MKKLLLAASVFVLASCTASISIKAQEFNGDPGAQPLADAKPLSPNKDKDAPIYPDTVQTATMGCSMLHKFNDVREKWGERPLFSGIGLQLVIPPNVYGAPAKPIKRPMTLFVNQDTGTWTLVSFWTDNYACLVANGRDFVPGGSSFSDEGNL*
Ga0114995_100179829	F033958	GGAG	METLSRRLEFDKHGQIVFRFGDNWSLSVINRGYGASEGLFEIAPMVGGDIEFVEGVSTEFDNVRGYLTEEQVFEYVDKMEKITDHAAVLSDSNLPYW*