Scaffold Ga0114995_10010484

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10010484
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5782
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024651	Metagenome / Metatranscriptome	205	Y
F071656	Metagenome / Metatranscriptome	122	Y
F075352	Metagenome / Metatranscriptome	119	Y
F089432	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1001048412	F024651	N/A	MYNNATFVDKEQLKNLKKMDTFVKDNMDRFNGTGEQIRELITKIEKKGHYYEGEADVLNMIGEEYNQWRKEKR*
Ga0114995_1001048414	F089432	N/A	MSIESKDWLNNNEWPDVPIDSDAYAHYTYLSELMEQFAKEYHENQLVKYALVTKTKFNKFL*
Ga0114995_100104842	F075352	N/A	MTESQEIEEILYEAHAHNIRREVMDLASTKLKENPKMRKVDAYQKAYLTLTK*
Ga0114995_100104848	F071656	N/A	MTDHEELSAQLHKAQMANKSYRNLPQRIMMQRWLDCDRDVYKFWDTIEWDSTWLKHDTPEEARQRDIEREYNKHPFKEFISKESILL*