Scaffold Ga0114995_10008874

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10008874
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6337
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F035479	Metagenome / Metatranscriptome	172	Y
F041447	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1000887410	F002915	GAGG	MKKLLLLLFLIPNLVVGREIFINDQGAQIEYSKPSVSCFYNKEAYEGYLNTCLILPNFETCAQTKYEMYICGDKNNIKQLEEKSK*
Ga0114995_100088742	F041447	AGGA	MAKNNQIEECPAHKCKPFMILSYILALFLILGIASFIKYLLIL*
Ga0114995_100088749	F035479	AGAAG	MKKTTINLKIFIAVALWAIIGLTINTQFDPATVIGSVLGSAFIFMWIGVLVIGIFAWIKLNKK*