Scaffold Ga0114995_10006540

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10006540
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7532
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004192	Metagenome / Metatranscriptome	449	Y
F008695	Metagenome / Metatranscriptome	329	Y
F017299	Metagenome / Metatranscriptome	241	Y
F043621	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1000654018	F017299	N/A	MKKEPLKITLKYYDKKISTEVDHSDLTLEDLHELWLEIVKAMGYHEKTIKEFYEE*
Ga0114995_1000654022	F004192	N/A	MIAENFNDWMASIKNIYYADNNLMSQAFEKLNDNDEKI*
Ga0114995_100065404	F043621	N/A	MFKITLESTWEHNGITKNWIKYLKVNTIEEVFNFYELDKIKLIEEC*
Ga0114995_100065408	F008695	N/A	MINEYRVDKIVHEWSEKEDRWIYIEYNAQRKIIGLNFMQGDEYDYFKEKWCHNDQGLTEFYNTMLYTFPIEKASVNTLEFINKVMWAYHSAIVANEDHKEIN*