Scaffold Ga0114995_10003990

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10003990
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9895
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F020608	Metagenome / Metatranscriptome	223	Y
F034356	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1000399013	F020608	GGAG	MDNTRNMKAIEDSKLDKITFNSLEKVERYIKELGYIFKVRDSVREDRSVIYRHKFTKKGHVFLKSSYDFLSAGSMEMGTVWTVTKF*
Ga0114995_1000399017	F034356	GGAG	MIHNDLKKGMRVLMTSIQGISSAMRTGTVMDNMKGVTRMVKIDEANGYYPDIGSVYVSDILYALYDNGMQESIDISEAHQKKLDTLQAINWG*
Ga0114995_100039908	F001521	GGAGG	MKLWITELVEDNTTAIGPYIKAETIAQANRIAIQYGLLVLGEIQELEYEVKLEERIVH*