Scaffold Ga0114995_10001431

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10001431
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16872
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022909	Metagenome / Metatranscriptome	212	Y
F023957	Metagenome / Metatranscriptome	208	Y
F029485	Metagenome / Metatranscriptome	188	Y
F033111	Metagenome / Metatranscriptome	178	N
F048576	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1000143110	F023957	AGGAG	VSNKTPYEIRLELIQEARLILQAKAGKPEYMPSTEEVISEAEKLNQFISRKPDVR*
Ga0114995_1000143123	F029485	GGAG	MDSYWEWNKENFPWHYDPSSKQSDVQYVGQYVSDDMDRYIEEAIGNFVPEDYYNEVSFKGKPYNPEAAEIMEGYHNDLTRAGFNEHNTGGRQTRNLPNFFNVLAEASGLWNPQIMMLEQPPGKFIPWHRDSYNNYRRNFAKVGDDTEVIRYLVQLNDWQWGHYVSVGNDVIHQYKKGDIHCWPEGIYHSTANAGYWPRYSLTITGVVTPSALHLRDAKQVKI*
Ga0114995_1000143125	F048576	GGAG	MTVEAYIPKHKYIATTLQSSNIDMDLSTAKVLELYGNAGTLLNDPENEVLPENYTVFENDPEALAQGIEDFPDSDFREWNQHNQMNNPGGIIDAPLPFVGEEKFDLIISYMKTANVDPDILEDMLTTCYEHLNPGGVIMFGVFIREVSLNYFVVRRTHEYGMLDEALIETTETSDYFCLINNDDIRPHIGRVPTEGDDGVLEATHYTWFWNSDYMDGYLKELFPDSTVGTRRLPPMWSIQTPFTVQKNS*
Ga0114995_100014313	F022909	GGA	MANSNNQKILRTFFDGKIGCVELDDYWMPKLEQFCKIAGDLGFKQNASPEAMKVDSIKYHCMVHIPTEEIYAVAGVQYMPEYKDGYYRVWTRLSRIPNEHIPMTKMVRYGRGHEMPEFDGLLYYNCKWANEQAGFKATFGTTLANKTYSGDYVKSTNAITDYIKRNWWKRKGIAVPEGIQDFYSVPQVIWNINFEKFKEFSV*
Ga0114995_100014319	F033111	GGA	MSDRKEIPYYFEIPELNMPSFDVKEYFVSDEERTIARTDVKTSDRLTGNSRTNTANWYQSFIKVEENSSQDKRDFNQVNLYEEANFDLTKLLKEWLHDHINLKFTSVLMLRTPANTNSRWHCEGPVFHTRQCALNFPVSGDFTKSEAQWATFPRFKDIDPRENEKHGYVTQTDMKDTEMLCRWDNQTVPGFQNTMIMHRGYNEHCDTDRVILSAAVEDTADINVVYKKYIAGNLFK*