Scaffold Ga0114995_10001385

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10001385
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17122
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F080527	Metagenome / Metatranscriptome	115	Y
F083383	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1000138519	F002033	N/A	MNKFDTFLSKHGTKIILILLVLTYFKSCGINSEVEKVKKELRLIEAEVDTLASQIVNEAEMIKLIKEVPAWKTLRIEEISDKERISINALEEKED*
Ga0114995_100013852	F083383	N/A	MKEYNVKYKVGQEVYVLRSKKITQNRINKIRVTEQQPYIKGNLDGTYIEMDGIEIDYLIETKRDFIHPHTKSTQSSYDWYSQEDVFTNKDELITQIV*
Ga0114995_100013858	F080527	N/A	MKKPIVVYYLHYYDEEHRERAFNKFKDFTICVMAEDNNEAIEKAKIIAQNPNIKIMGIATGREDWVNEIAPMGTGEQIMPQGGWNQQWKNN*