Scaffold Ga0114995_10000318

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10000318
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33158
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F022460	Metagenome / Metatranscriptome	214	Y
F076611	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_1000031817	F017335	N/A	MNIESLTLKNRLTIEKTGEQYFDLSAPSFQYKRELGAKAIHYVTIDQAGRIDKISEQYFGTGAYVDAICIINNIFNPFTVEEGDVLAIPRLDDINLVYKRPNPASRPSVTLAQYTNTDRQSVQDQSRVQRLIQKAKTKKNGVKAPIPPNMLQQGQDAKVYKGGRIILGANLPTKKKTDKNSTT*
Ga0114995_1000031819	F004606	N/A	MKTHRIFNKGQTVYCLLASHTNPNILLPVKGVILDSKWDPVNPLYQIRIIKFYDNMKFLKQHFFDMNFRHVFENRARKMILKSEDFKTTRALEDRLNDKDRERFFVVIESVMCTKTKVNLLGLFEKVQFFMISKNLKEIRDISTRPFFKGPLSLDSVKEFDSRYKIAWADKFKRSNLDIDKYLNSLG*
Ga0114995_100003182	F076611	N/A	MAQELLDKASYSVVRTNPKLTANVKIVSDGTDIYLESFSASTQLASQKFKAFKVDGTSTYDRDVNRFFDNGQFPIEAAYEIFQEYEDTAVLSNYRNQYEMFYCAGTRSIASESYPQSLGTLAPLWLNEQIPSAFVIFRLDNPAAVNNVTAASENAGKANAQTSVNFSKQVLENCTAIKTFDLTEGSTLGSYIRNYRNQEEFPEVPLNMTWRKDEPILWSGISYKNGGFVNSGNFAYEDIVVKDSTIIQDEYLFTQGFQNNGIILANLLNLEFLFDDPTASDYSINRYFGMYVNEIEEGNFDISGEGFYKNTEKSQLPTIKTITEVSQDLNTPFEITNDAGILLFLDPTKTTTITGLPTPTRVDEVESIFYVKDKKDDFHTVKKGSLWGTNEIRLFDTKVDVSLFTGYKEPDTFANASIVSHKGFSQMYLKILDNVQEGSKISFYDGLSLTGEIFADSTLATIPGKSFESFFNPNGTTEEVAQSITSAINIGINENNRFFTATYNDSTVYVKSRFSGTRFNRLNFKMDVIYPEQFLQIETYPLTTEVEPAKTFVGGNDVSNGLLKVEIGDQNRFVKGNFVQTTGDFAVIGDWVPYTEEPIYSGNNQIIGYTNIDKFVIITCNDNQIMVTNANQVALYSDYKPSFGRFSFFDVKDFDFDFYSTLYSEEGELDFEYAEYNKSTPGTNPPQYTGVSSTPQIREFYDNGGFYNLIGLLNDAEDANPDDEYIKSEYIRLEENYLTSQANISRIAPYINKWAWINDGKDVRNHPYRLDVNQAFGLNNFAPSKWDLGQEASGFTHEWYYLSEFPEYFTKAAIKSSWSYIDKAPVDNTDGVGQTFALGTFQNVTKDNFNDYFIIERFTTGGITEIDRQLRYTRLNGGNEKNYSEGFLRGVRIIAKSKAIGSEKPDFNARSLSYVQDGLFNDYRFSAILVPNLPDKPESQIKFIKNEKWKTVVMLISVDYANVCLNNGGDSIIDRTTLYSLNSSYLQTANCAPTPSGDSFKYTDTVLRGAISFATSTFDTASGLYTINGMPNSTGELTDFVNDIRVIENGTYGVVKISGGYLISGIQSIVSSNQFICTSVKLAGNDILLPNPTPSTLVLRAATYTVENGGYFQFENRLNSISFGEIFNAVNQGNPNIIYETITEAGLQVKNTDGTLAQTFAIELRAQADILKSVYIGILPDPVKPTAFNLTDVVGYDLSLQKNPNITPIARHAGYYAPYALPLLFFRDPYMNLDFTGNVTGAVTGGASISDSVYKLKVLELCKFKNSQFNSSDVNFGQVQNFFYHKVNEEDPSTILELSRESAFPSLYPLIQEIGIDYKDFYAFSSNWEPSYFTKSIDKSLIEDVIGTRSMFERKSFFGSKYLKVPETIILETFKPDPFVRAAVKQPNLIQGTFMHQDTPSVTVNKRQILTKGVVNTRDIKKVPSTPTVEFYLFNQKRLIEFLFIPIKAQFVKYVNELYGFGDLETLDDDVNQYIRENILKLYKIEKVELYTLASRDISESTYSTAELTDAEKISAGLTVNDNVSSKTINTNPFDLRLIYNKRTGFSESFGFSVTIVKK*
Ga0114995_1000031821	F018962	N/A	MTKIILESARNGVIKKVVDDNYGGGKEHFTSTDVFELSDTDRNKFNYIKRFFFDLCDDLGLEIGNKFDKDVLDINTKWGSHYEPTAKDVEFKIKRLKSELKELEEWKNI*
Ga0114995_100003187	F022460	AGGA	MATIKDNRTGFPSLYRATYEEGWELKNTGYDYSKNLLNNTMSAYMFKNPRLKTFLEDYLTPIMVFYINKVKYVRIFYNFAVPKWYQKIN*