Scaffold Ga0105096_10089402

Overview

Basic Information

• Taxon OID: 3300009170
• Scaffold ID: Ga0105096_10089402
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1531
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F010832	Metagenome / Metatranscriptome	298	Y
F029676	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105096_100894022	F010832	GGAGG	MKDIKDVVAWLEEELAHFEMAIEQHNYVSKADEIRYRMAQELLAWTLGYKFDKKYLASPVSRVPSEMEHDTKAFGGRR*
Ga0105096_100894025	F029676	AGGAGG	MGHLNKTFFSYMTTQDAWDEYLELIKDDEHFAEQWKDTDNDFEDWCEAYDIILVDTRDRANQLEEAQLE*
Ga0105096_100894026	F003803	GGAG	MTKNKTLLRFRIYDGDREYTDYAIIDSKQLLTLNYKEIISKFFYDNKVDDEQCLSDGRAVRIESEIPITDADVKKLENLSMAYLHDFSLEEVA*