Scaffold Ga0105097_10041236

Overview

Basic Information

• Taxon OID: 3300009169
• Scaffold ID: Ga0105097_10041236
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2478
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053986	Metagenome	140	Y
F062567	Metagenome	130	N
F079819	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105097_100412364	F062567	N/A	MKEHPDMNQQMEMFHPSNGLGRYKETVAISTPTVAIRHDATDTSREAGEKAKPNSGKQRELIHFWIKWATNSEAKGITADELSTLLQLPAQSVSARINGLHRDGFIVDSGTRRKTRYNRNAIVWTITYGI*
Ga0105097_100412365	F053986	GGAG	MSEGVAWNQGELSEETRKLVLERTEMTNHQMAVFNLIDEIARPQHVPRKFRDDHLIRGLRNMLIDFQLSGQDDYAECVILAIEGLGGQVKPD*
Ga0105097_100412367	F079819	N/A	HKTYHYEVFLTSLDDGQQCMVQIFRDPESGRVLHSQLAFKNALGSWGVPYQLEKL*