Scaffold Ga0105097_10000132

Overview

Basic Information

• Taxon OID: 3300009169
• Scaffold ID: Ga0105097_10000132
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29484
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (80.85%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F015731	Metagenome / Metatranscriptome	252	Y
F020909	Metagenome	221	Y
F021112	Metagenome	220	Y
F028173	Metagenome / Metatranscriptome	192	Y
F033806	Metagenome	176	N
F045100	Metagenome / Metatranscriptome	153	Y
F070118	Metagenome	123	N
F077306	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105097_1000013210	F028173	GAG	MADDVIVLTGIKETIDALKQFDKDAVKRFNKVINTELAGAQKDARNIISEDPPMSGWRKADAAKGRVRGGKGWPGWNAGEIKSKITKTKAQGKVRGDYTTSAGALLNKSAAGAIFEVAGKKTKAGFGGGSGQQFLRTLGNRFGKASRVVWRVVDKDRARIEENVARALEQAKADLQKHLNKERA*
Ga0105097_1000013212	F077306	N/A	MPAFDGTTSPSVAVQFLKSGTWTSVTTTDVIQIDIRRGRTRQNERDQAGISVVVLNNTSGFYDPDNTSGSNPWVVGGVSILRDGLQMRIVATIGGTSYNLYYGFLEETQVNLDIVSSVTMTFVDGIAYIADAQAPALATAGFAETAATRVGRILTNYVGWTGSTSLTGTVGMLATVQNRSCMALIYQAVDAIAGRFYISRSGVATLVPLADKFSRPTQLLFTDTQASNTVGYMQLLTNPGTYFVVNQAVVDRTNTTKQYTSRYNPSVSAYGIAKTVIDAPVATDSNAQNLALYESRKLAEPLTYVERIDFNALALSTYGALYPDFLATELSDQVSVVRSGRQWNLVVEGMAHTITQNNWVCSYTTSAINPYSITI*
Ga0105097_1000013217	F000368	GGAG	MEQFKQITLTWFRAAAAAAIALYLAGETDLKTLGMAAIAGAAGPILKWLDSSAVDFGRGSK*
Ga0105097_1000013224	F020909	GGAG	MITKRGKRVRAVAIAVGIILIWQVASNLWWVGIDAPSAEFLGWCWGSMSECVVL*
Ga0105097_1000013229	F033806	AGG	MNLDQFKQPRDPLFSVHTHSDGSIALYLEEQDAVKDLVQDVVGAYPLDDLDLLRHSADRSVKSENYFEHLDNARDNLSENAPLLCNMTEKEALILAEDLIRAVKFARISREAGTNYPSLKAVK*
Ga0105097_1000013233	F015731	N/A	MGVNMSVEIETGVVDFDANTAAWLEQYKSAVAKIKELQEVADVARAHIERALGDNETGMFLNRPVVRYSFVESRRFDTKRAREILPAQVIEALEIVSTSRRFSIVNEDN*
Ga0105097_1000013244	F070118	AGGA	MSELDFKPISCKKCGNLIWAGVSASSRCDVKLDTARLNLVQEVLALTSGLGTYQVHRTAVSFEATRRTAGRMTAADPIVLATHTCRALTVFAEEAPDYFNRVKLSTTSEKVPF*
Ga0105097_1000013245	F021112	AGGCGG	MWLTTIPNLQVMAGDYITPGRSGSGTVSAERSIGVNVNALDYSMAIELLGILHSWESEIRSARQLTPPALLKKQPTTALEVETACVFQLAHLDWTLGQEWAADFYNEIKEQYAKGMAAAKQFVEQPRRIPCPTDECGKYVVIDAENLMSDVSCFGCKQSWTVLRLVALAMSNPNRKFFLDVEAIALWLGISQRQVHKIIKANGIAKNGKMYDLAAVIANR*
Ga0105097_100001326	F045100	AGGAG	MSYTVTSDKFEAKKKGETITDKELLELGLNADALVAGEHLKKTVTTKPATVEETK*