Basic Information | |
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Taxon OID | 3300009168 Open in IMG/M |
Scaffold ID | Ga0105104_10134350 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1336 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | near Jamestown, North Dakota | |||||||
Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002037 | Metagenome / Metatranscriptome | 600 | Y |
F011384 | Metagenome / Metatranscriptome | 291 | Y |
F019123 | Metagenome / Metatranscriptome | 231 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0105104_101343502 | F019123 | GGAGG | MVDSKPLTQEEIIKVYKEAFGKGDQLVTLEKIFRFARLIEGKVKDVHETR* |
Ga0105104_101343503 | F011384 | GGA | MYTKLDDERQAKFIIKYIIEHPSCSIKDIVQECVIARTRLKYLESQGYIVLPKLTRMDILDRRFKNRNYVSVRVGREYGKWIGY* |
Ga0105104_101343505 | F002037 | GAGG | MNKIYLVFGLVLVALAIWGTEKAMGQTTTILAPDGSVTVCQVGSNGVIICV* |
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