Scaffold Ga0105104_10134350

Overview

Basic Information

• Taxon OID: 3300009168
• Scaffold ID: Ga0105104_10134350
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1336
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F011384	Metagenome / Metatranscriptome	291	Y
F019123	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105104_101343502	F019123	GGAGG	MVDSKPLTQEEIIKVYKEAFGKGDQLVTLEKIFRFARLIEGKVKDVHETR*
Ga0105104_101343503	F011384	GGA	MYTKLDDERQAKFIIKYIIEHPSCSIKDIVQECVIARTRLKYLESQGYIVLPKLTRMDILDRRFKNRNYVSVRVGREYGKWIGY*
Ga0105104_101343505	F002037	GAGG	MNKIYLVFGLVLVALAIWGTEKAMGQTTTILAPDGSVTVCQVGSNGVIICV*