Scaffold Ga0113563_11235060

Overview

Basic Information

• Taxon OID: 3300009167
• Scaffold ID: Ga0113563_11235060
• Source Dataset Name: Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 871
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie, Old Woman Creek
• Coordinates
  • Lat. (^o): 41.384
  • Long. (^o): -82.513
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002554	Metagenome / Metatranscriptome	549	Y
F075368	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0113563_112350602	F075368	AGGGGG	MNIFEALAILESAVLECKKRNVNTPEATEALDLLAPYVRPKLVVAQFRHHIAREHDKNHEKEGQQQVLRATFPEIRNSVRELIGTEMDALARDFPDTRDMEVKNAIECLAREYGKLRKPWEFRAYR*
Ga0113563_112350603	F002554	AGG	LLSPQFFAILRAAVAKVYVMSFRTHNDRRPSKFIVLADSMKSAMAWEHGGADFQSRFDKSTAQAEQMKEGVLRVL*