Scaffold Ga0113563_11231810

Overview

Basic Information

• Taxon OID: 3300009167
• Scaffold ID: Ga0113563_11231810
• Source Dataset Name: Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 872
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie, Old Woman Creek
• Coordinates
  • Lat. (^o): 41.384
  • Long. (^o): -82.513
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001182	Metagenome	755	Y
F003407	Metagenome / Metatranscriptome	488	Y
F026823	Metagenome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0113563_112318101	F026823	GAGG	MPRGNKPRVGPAIEAALKKKSNLSDLDLAKMCFCVRRSAARILFELHLKDMVHISGYTRVNANGQWRPLWSWGEGEDAQAPGPVPGAERIRKYRDKMSADDKDFGL
Ga0113563_112318102	F003407	GGA	MTNELLPAIEACLDLVNDMVHPEEFGHAIPDELKTRAFVVRSMLERLKARTEASDA*
Ga0113563_112318103	F001182	GGA	MTYSRTPNCPKDLFEFVCSVEDVDLVCFLEYSPAEKGSTDSYGAPYEPDFEESMTLNNAYISETDVDVAHMLLQSLVDHIEVSALEKYNDK*