Scaffold Ga0105102_10048443

Overview

Basic Information

• Taxon OID: 3300009165
• Scaffold ID: Ga0105102_10048443
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1858
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001298	Metagenome / Metatranscriptome	727	Y
F044220	Metagenome	155	Y
F077033	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105102_100484431	F077033	N/A	ACASALPMSEIPGFEVANAVDADTGLGVQVLMGQEQSGYYNVTATLLFGAAVGRATSLHRLKTA*
Ga0105102_100484432	F001298	N/A	MSLYSEFLADAKEMIADFGVAGSANSGAITFSCLISDPAVSTVLEAGGYMERTQYSVRLPAVTASWSQPDGSIGASAALLSSGAPIPSLAQGKKIVAGGKTVRITSQTYKPGSAWITLVVIDDNQ*
Ga0105102_100484434	F044220	AGG	MGTKSIRHIVEATLATYLSTQTGLTTVSFLTGDSAATQTLPKAVVLCESARSPNDLPEGEGNFSCSVRITLFSNA