Scaffold Ga0105102_10030727

Overview

Basic Information

• Taxon OID: 3300009165
• Scaffold ID: Ga0105102_10030727
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2251
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060610	Metagenome	132	Y
F079784	Metagenome	115	N
F100269	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105102_100307272	F100269	N/A	MASVRSETIYLVAIIVLLFLLLKTCSDGVQADYRLKHTIYEDSVLIASQKKIIAQGSSDAAKQAQQIAELEVKVKNASEVVKIETRTIIKTQIKLGDTVMIDKKPYIQLPKPFLKTTEWYTIGGMINRLGWLQIDSLVIPAKFTYAVGDTMRTGFVNRLLKKKDTVVRLRVDNPNVQVVGLENIYIKQDKKWHQTTAFKLGVGAIIGFGLGASRK*
Ga0105102_100307275	F060610	N/A	MDDGRDSTYTTLDEGCVVGIGCKVHTHHHVIKLEPQVVYQSMEKFTIFGKQYCTNQWGQTFEIAADEPVPEPKPMQQFYASDTIQPTTSAFLLAPKPEAKIIIKPRTEFTEYKPTMDAPIMGMLLTFTIYLTVQWAWSSMGAWNNLYSELSACLRSSS*
Ga0105102_100307276	F079784	N/A	FLITCGAMTTRKKVSKPRQVLDIIIKHWRPTVGSLVILSSVFALIFKQITTETLAAIVAAMVAAGYIPKSNDNG*