Scaffold Ga0114975_10121395

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10121395
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1505
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F023834	Metagenome	208	Y
F027417	Metagenome	194	Y
F031792	Metagenome	181	Y
F093528	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_101213951	F027417	GGAGG	MTYDYRVTFITDYLTITTNVCLEGDDHFQNLSDEAYEQATINGMNNIEDEIGKIDETIINDITVTLLLDDEEIELGGFGEFPPVHVSIVEGESK*
Ga0114975_101213952	F005558	AGGAG	MDQESMSWGELAELTHTTQVERFNFCTCEDNEGNDNPYEDCPKEDK*
Ga0114975_101213954	F093528	AGGAG	MSEETTTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDVPDKAVNDVVKEIQEEAGE*
Ga0114975_101213956	F031792	GGAG	MGYEPELNDPIFYEEEKEREIKCFICSDTLDEDDIVWADCEGQWQVRGREGNDTAWCVSCLPSEKGESNE*
Ga0114975_101213957	F023834	AGAAGG	MNKEYWQAKAELCRDLALIQIEDEDTEKEAGMNLMRMTYALSMVDAYSEGKGENE*