Scaffold Ga0114975_10087142

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10087142
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1813
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035668	Metagenome / Metatranscriptome	171	Y
F059759	Metagenome / Metatranscriptome	133	Y
F077016	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_100871422	F059759	AGGA	MTTQQIWQLLEIYRSMQVANTMIAYNNTFEELHTFIEENCLKVGA*
Ga0114975_100871425	F077016	GGAGG	MTDHAERVREFYRKQGAEREQQRLIALLKEQKVIRNCAATNLLVFVNCDNFEVLYLKGVQDA*
Ga0114975_100871428	F035668	GGA	MSCNQSCNDCQCKRTNAVNIFSKDYSAGQMNGRKAEAQRTSDALIELERSQVISNAQMQAVFDLILEKLTDAVDID*