Basic Information | |
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Taxon OID | 3300009164 Open in IMG/M |
Scaffold ID | Ga0114975_10014983 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4758 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000710 | Metagenome / Metatranscriptome | 925 | Y |
F004838 | Metagenome / Metatranscriptome | 421 | Y |
F022872 | Metagenome | 212 | Y |
F041161 | Metagenome / Metatranscriptome | 160 | N |
F083616 | Metagenome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114975_100149831 | F041161 | N/A | MMSKQIADSIEFANDFLPARTTCQEIWYILKDNLIYKNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACAKARNIPARAVIVGNSSQSPTHIYAQLFDGSKFIDFDLVSSSYGTTKAYKNKQIIKLH* |
Ga0114975_100149832 | F083616 | N/A | MFLQLHDGPDLPYGLRPFPYPKRSGPMMPVRYAEDPFAPGSPVMQTTPYRLLSGCDQAQVYADFVPQNANGWKVRLDQVSQGQQLVKNYQTLREAKGTGSAPIYGADGTITGFKQANKAEVVAAYIQLGLKALQLAQAGVRAGEASRLKEDAQKLYNENKWGIADVCNQTLVQLQNNAQNCYDSLNYWIKDQGTPGKNAGQKRIANRSVVIRQNALLILVKEIEAKGGSFTPGGKGAPVGIAAILALVAGAAFLRF* |
Ga0114975_100149836 | F004838 | N/A | MALSAQDKILYVANKLGLSTLNQMQGSTGAVYDVDTELSGQIFTSASRHQNPSVTNITQNEFEVNEALLVETIGFYVGSGGSAQNIQQFYGSNAVIVYDLIIGNKRVMKDTPVFSAGSPYTFATAGKQIIDTGGDFPVTQVYFPRHQTFMEGAGVLIPPQVQWYIDYRIFNVVTGAIIAPDVNSEIGCYLFGTRVLLNFNTSI* |
Ga0114975_100149838 | F000710 | N/A | MASSMDISYRQGIRSKGFAITTPTGTTQQTLSLSGLAKSFEGLLLTSAFTATPGVVINPKQLRVTLTINNDVVIDDDSALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNPAASQNVDVTIWYRNEL* |
Ga0114975_100149839 | F022872 | N/A | MSWQIPTQIEQDIIAGKAQYRSFQTGVGGQSILPVPPNAYAVIFGYDFSPAGGGFVSQTQRAHNINNLILTTDSIRFFETQQISFYTGTDFYPFIHHVDIKTSATTSRVDASDPGETQTTSYQIFSEVDNTPIARQVYITSDKDITISVGLILDSDVATTGAIPVTSRTPALMTYGGSPQTPAVQTDFGPAATPLQFMQPSPKDFQDFGFGLLPNNANGQSFATPDVTRGLLDPSVHLTTLGVTFRDAAAANYFLCLHYALYTKTIPEQR |
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