Scaffold Ga0114975_10013738

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10013738
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4994
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025680	Metagenome	200	N
F057894	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1001373812	F025680	AGGA	LGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERHDTVIHRDILLNIAATWIIRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQILWEYNLVQQRNLKESLFRLNSHRESGRKKQATT*
Ga0114975_100137385	F057894	GGAG	MRLQDDTFTGYLTPIGQVQDVEVTFKLKAMQKIMEASEDLQVDAPNEYLIGALRDSEEGYKTADVIIYNKVVRLKLTEEDIKRSKTLSL*