Scaffold Ga0114975_10009164

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10009164
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6211
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F013755	Metagenome / Metatranscriptome	268	Y
F025727	Metagenome / Metatranscriptome	200	N
F045750	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_100091642	F025727	N/A	MSKHSYPLVECIKVVQLSDGRTVRVRRDRTDENLKTTYGDGDIHLTCVSQAHDPIEMIKTLARLESVRSVELVDSKGNGIVIHKQK*
Ga0114975_100091643	F045750	GAGG	METVMSRIGRMLGMRMHNSNRPVCPVPQSPETVSSSPDTIAIDKEPKKKKRKYLKHTYMKTNDSIDKVRGFRVKGLTYKAIGAELNISKQRVFQIIAAGKKRDASNNKWTAGLSSRNANLMEKLGIKDKETAIHAIHTRDIVPFKWPNFGVRSYHDLCSWLGTLPADPGLGRHCPHCGKTSKQ*
Ga0114975_100091647	F001259	AGGAGG	VSFMGPDTVAFIYVHAWNGLIRVESLDTARNIDGNPEWKHVSTISAHVVLEQILRAKGKERNLIIKGLLN*
Ga0114975_100091649	F013755	AGGAGG	MNDHIPDATKMISDTPISDSTPHNVGDLAMVCRRLERKLSATRKYLSQITEQVKQLETENDALRADLLLWHEQEVKP*