Scaffold Ga0114975_10009128

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10009128
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6223
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F019762	Metagenome / Metatranscriptome	228	Y
F024559	Metagenome / Metatranscriptome	205	Y
F043407	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000912815	F002977	GGAGG	MNAQLPAEGIMKTNDWGDSRVYRIACNCHDETHNHNMWVEADDHDIQVTIYTTGKTNWWSKTRWHHIWTLLTKGYIDTESSVHLTKQQALNYAETLKSAITDLEDFRNARQNKEERVTITKMANEQDCV*
Ga0114975_100091283	F043407	N/A	MARTPPQAVVGINTHGLYGAVPPGMTVGGVLPVGQVYTTNTTAGKFLTSGSNGTNWTTGAITTPYDSVMVAKNNPPELEVKGRMVINGRDLEERLNTIEKVLQIPERDVILERKHPKLKKLYDEYITALGKYRTFEAIKGDENGTT*
Ga0114975_100091284	F019762	N/A	MKMELHESVAHTRKETTVKESEGFRVRLVKHEVISPKGLFSLDIIQESLKDGEVADSQTYNFFMNKEELQSLAHGLTA*
Ga0114975_100091286	F024559	GGAGG	MTCALIKLILGIALIFIVIVFGPIVGIWSLNTLFPVLQIPLTLETWCAFFLLFGSITGLRIGTNK*