 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009164 Open in IMG/M |
| Scaffold ID | Ga0114975_10006071 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7782 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (75.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000273 | Metagenome / Metatranscriptome | 1401 | Y |
| F000961 | Metagenome / Metatranscriptome | 820 | Y |
| F042803 | Metagenome | 157 | Y |
| F056310 | Metagenome | 137 | Y |
| F100698 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114975_1000607119 | F042803 | GGAG | MLDDGDEGEFITYIIWDEVTVKWSWSEGEDHETDGYFDIFVYKDGLDITYDIPKLHFKWIEAEVKKQAGYELPSHQRVASAINGHFNKTF* |
| Ga0114975_100060713 | F000961 | N/A | MEIDPVKYGVLWQKVQDYERRFDQMETKIDKLELSIEKLVALANQGRGGLWVGMALVSALSSAVGYISHWVGKN* |
| Ga0114975_100060715 | F100698 | N/A | LIAFLSMVVVFGLLLPILGMMYLDILEAKQETKRQQEVVQRLINKAEEKNE* |
| Ga0114975_100060716 | F000273 | GGAGG | MSDEKIQAMETKSALVEKITFALLPLLFSCVVYLMSALSNLSHEVTILNSKISLVVTSDNKQASNTGAELAREKLRQDLEKEIQKNRDDIQVNRLHIAILEDRAGMKTTFKKEDK* |
| Ga0114975_100060717 | F056310 | AGAAG | MTIYIPLLYICVGLECAFFQSEIYTLEEKKCEQEIAQQKIELIKLGRTVQAICVDIKILEKKSNVTYRSLTSW* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |