Scaffold Ga0114975_10002079

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10002079
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13844
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.45%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F022861	Metagenome / Metatranscriptome	212	Y
F025233	Metagenome / Metatranscriptome	202	Y
F048842	Metagenome / Metatranscriptome	147	Y
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000207914	F098924	N/A	MLGKLFNRNKNYSKNNKFEVLIIGEDETDFQEMLGITDERREELMKIAFDTYKSEELFTSTCKLAVANCTHINEVVFVMSLLCKIREYGNNPLIDILSKMVDGE*
Ga0114975_1000207915	F096905	N/A	MENKIFTSVIGFNFELDLVDNNGQLVRTGAKKVKNYLPSETPNVGTKIGGEKWFTNYNEPLLSKIRDYRKRND*
Ga0114975_1000207916	F049561	GAG	MTKIRVELEETDLFNAIKKILDHGNRVEIAKALTSIIAPHERLSSIFFKTYFGGAAPDVLPEGTMITVKPNSLSYKVNIDGMKRIGLLNTSGDATAIIKEFRGFHESHNYYVNFMNVDENDKAFEDTGFLSYKDVVSIIEDL*
Ga0114975_1000207917	F010462	N/A	MHYQLQNGKVVYLSIDEYLELTDLDIQYLMSIDYGEFITDPFSGSAVEKTSKKEYDFDFLTSDDEEMNNIASDDEPFDDIIDISIP*
Ga0114975_1000207919	F000716	N/A	MIKPMYIMEKLKEQVRNYQLISQTVISYEQDGYSAYQNYLYKRALYGLDSLTEKELTSMCSKKKQRIINVYKRAQLTLNKFKQQLTISYSNLIFETLFPNSPITQFLLADNETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDAPNQLPRLKYEVKA*
Ga0114975_1000207925	F022861	GGA	MKAVCIDSANKPSKIQQSEWIKEGETYTITKVIRMGLQDGKYGVLLKEVQLSAESFPYEYYDADRFLPLDILIEVREEQAVKEADLELI*
Ga0114975_1000207930	F048842	N/A	MKNKRFMLVPIVLGALVLFGYGRCVYKMCTCNWEPVGKAEIVYTVGTFTGLGVVIGYLEIEDK*
Ga0114975_100020796	F025233	N/A	MHLIIAKLMFVLQLHSGVIIPSDDVDGRTIYSVPSAGIEYAYKSEIIQYLETGVFTYDDTLDDKVDTSIFKK*