Scaffold Ga0114975_10001851

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10001851
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14707
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (86.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F002052	Metagenome / Metatranscriptome	599	Y
F010749	Metagenome / Metatranscriptome	299	Y
F011670	Metagenome / Metatranscriptome	288	Y
F099274	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000185114	F011670	N/A	MQISRAEQSSIKYNLEQYRLDAARMEKQRTDDYAKQIEERRLDRIIAERVSRNLRLDLDKGRNIDIEC*
Ga0114975_1000185118	F002052	AGG	MTRTITFSFTIECAGQGDADLAKVESMIDLSMQDLVFDDEFIAALDEKESVTINVKMVN*
Ga0114975_1000185122	F000354	GGAG	MAKVNYNSFSSFDLNEACDHFDSEKQSNWKKIGKFIVADGQDYVNIMETEFDFEDTADSEYMAFEAGVKYALTKMNIAFEAAGLDLQVCETDLVESMGFVLVRTDDTPEDFVKRVLKKPVLMVESWID*
Ga0114975_1000185133	F010749	GGA	MKKFTFWRNSIVAETYVVECETEEQARTMLMNGEVEVFSEEWMDWATRDFELEDVEIIDPLYLMIKQHTQKETT*
Ga0114975_1000185134	F099274	AGGAG	MTTVEGKTVKVGDYVGFKCDVEQGGVIYKIEGDRLFLRAGPDGFEGGYIGRQETTVQQASDCWID*