Scaffold Ga0114975_10001785

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10001785
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14982
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F006846	Metagenome / Metatranscriptome	363	Y
F011394	Metagenome / Metatranscriptome	291	Y
F021988	Metagenome / Metatranscriptome	216	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000178525	F021988	GGAG	MTNSFKKEDGTGMVPPANAGAPAGAVTSTNTPKKYPRQGLKVDTNKHGIRRETSLVPKPPKKTGRKKV*
Ga0114975_100017853	F066776	AGG	LHLTEKGVEVFIKRSQSKTQESFWNNYDLVIWKKDNGGYTSVNGMYRKDAWGKVEKFSISQEGTWKLSKKYVKHFK*
Ga0114975_1000178533	F006846	AGGA	MLTDLVEKYLMRPKRLREAIQAVVRENDELLRRLAEYKEEGPTNLTWAEGDRWYGWTFNPANNRYYFDDIGNESLMGLWEDQWAREANDYKV*
Ga0114975_1000178540	F000852	N/A	LKGDKQMATKREYLKQQGIAVGVRGRFSGAAKVALAEAEAKGIKFTAETPAGKAK*
Ga0114975_1000178541	F000441	AGGAGG	MSDPYIDEQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMEAIDQ*
Ga0114975_1000178543	F000263	AGG	MNAEDIGLPPHLQRMVNAGVTGLDIMHGELKNLMLIAEQELTLAQETEEESGEAMDSMERKYWEGVLDTYGELYKLTYDLSFAIGARNEA*
Ga0114975_100017855	F011394	AGGA	MFIDKNKDHFKYGINEWTGEPNKPVFYNKEMALKIRELKKPVNNLEMDIVKYPEFLAIRLYEDNFSQYDGSIKMQVIEYVEMVKRILETYGVRVELEGKPGGNRR*
Ga0114975_100017857	F072349	AGG	MDKVLCYSCNKSKNALAAKKSALLAINLLLCQGCTDNKLEPRWIVILAGRQYGAEHVKEHIAKKKYIGLDITASELLI*
Ga0114975_100017858	F105192	N/A	MKMFSIYQILITLFAASISGLFTAYINSRKAKKEKAAQAADKAHDQLLLEIKDLQIKLYKLEKDLNEWKDKYFEALQELIKVKAELEGTMLKLTHIEMHSNED*