Scaffold Ga0114975_10001328

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10001328
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17741
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F052463	Metagenome	142	N
F067676	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000132810	F027776	GGTGG	MMNPLEIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGADSVQRRVEEELTTLRQELKATQVELAYAKAN*
Ga0114975_1000132816	F039985	AGGA	MLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGAGVRDWQPDETLGAKSQSPGEGYKRGFVITFYSKELGMVDWSSNAYGPCKGFEKIYAECADKDDKDGRLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGGDEFDSPPAPAPVRKAKPAPAPVMDDEEFF*
Ga0114975_1000132818	F044360	AGG	MALKKLTDRDVFPSDPFKVFEHSLMVEMEMAKMEHEKVWGIDRVIDLVEPEFRRKFNAQRERIWEASQARDEERLERAIKGMIAAYKALTRWATEAGIEQMPKIDCMEYMMQDDGLLVVVKDKKMATWYEQFRKQKGARSIWTLEELEVVMNGPTLKQVREIKSALPGTRMIPIQPQGSSGFEDMENDIDISKPFKGGKLFDTKAAERDKNERRK*
Ga0114975_1000132819	F052463	GAGG	MALLEDLDAELVLSMFEEGRSKADICRGLGIGRRALDKWIDENDYHSIITRARVEAASHLACETLAIADSMDVENGQRDVQRIRTRQWLAERWDRKTYGTDKAQSVNISIQGLRMEALRHVEVVEQLSTEQMPKLSTE*
Ga0114975_100013286	F067676	AGGAG	LTKEEALRIIKLLSALESWAFSQPDSRSLPDYLVEDIGNAMVLLERIILDKNA*