Scaffold Ga0114975_10001191

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10001191
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18866
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F007163	Metagenome / Metatranscriptome	356	Y
F008554	Metagenome	331	Y
F011276	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000119111	F008554	GGAG	MNIEQDILDRAGKAMANDIDREVLWGMLEGIGWTRVMLTRLTDNNHAVDITHWLALNTKKAYERRGRDFIFESQKDANWFKLRWGTA*
Ga0114975_1000119114	F011276	GGAG	MIKGLMGTQGITVSGGDVSLPYISSNANNPIQGMIRINNTDFEVFNGTGWQSLPSSYATVKLDQDTQDLLTWARTQRTLERNRAVLIELNPALENAYKAILRAEQNFDILSKFVENDLDAELREIAP*
Ga0114975_1000119116	F007163	AGGA	MTLEDLQHIFEYQIEEGTEKLYFMLTDGDCHPLIQRHPADKLADLIPMLDSFRYTGHNVMPRFEK*
Ga0114975_1000119118	F002869	GGAG	MSNEITTEMLDRKIAWCRQNAFWGTPSAVPQVLDFYFEKTRTSVDEDWPESFTLEELAQALGIEQVRFRIYYSEDNLTLRLFVFRPRCTWDEQKIMLDLGFVIARDGDSDTIPNQPVEEIEQ*