Basic Information | |
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Taxon OID | 3300009164 Open in IMG/M |
Scaffold ID | Ga0114975_10000973 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20943 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (68.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007163 | Metagenome / Metatranscriptome | 356 | Y |
F011276 | Metagenome | 292 | Y |
F017266 | Metagenome | 241 | Y |
F034176 | Metagenome / Metatranscriptome | 175 | Y |
F075746 | Metagenome | 118 | Y |
F091317 | Metagenome / Metatranscriptome | 107 | N |
F091434 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114975_1000097321 | F075746 | GGA | MTIFIPVLFICLNGNCEFMQAKTYYKNEAQCRASLDVQKQHMRNLVKEAEKQGTNGDITILEGTCIDTEIKTTQGRVT* |
Ga0114975_1000097322 | F007163 | AGGA | MTLEDLEYIFEYQIEEGTEKLYFMLTDGDGHPLIQRHPSDDLAGLLPMLDSFQYTGHNVMPRFTK* |
Ga0114975_1000097323 | F091317 | GAG | MKVGGVDPAIAHNIELAKLTQQQTIKQQQLKVITDRQEEIKQLRPKDPGKGVNIDEMV* |
Ga0114975_1000097324 | F011276 | N/A | MMIKGLMGTCGVTVSAGNTSLPYVGPNPNNPMTGMLRINNTDMEVFNGSSWQQLATSYATVTLDQDTQDLLQWARTQRQLEMNRATLIENNPALEKAYKAILRAEQNFDILSKFVEEDNEHGIVVGYNFNTP* |
Ga0114975_1000097326 | F017266 | N/A | MGKSYVNSLLKNWYATMREQYTPTVKWQRLPGLKLQAYTDDVGPRGFERGLNESDMDPVQAWTTECNCGTRMSFNVWKFKNEKQITMFLIRWSE* |
Ga0114975_1000097329 | F034176 | AGGTGG | MRHPDLKHRDNAGDLEYFISKFECRIEDSREYNQYVRPMPYYRDVCSSDDWRMETKITPMKAIHLTTDNLERLIREQERMERMESDAEYGKKLCNMLHADERVRDDNPAVAKAYRNYLTLLELARK* |
Ga0114975_1000097345 | F091434 | GAGG | MAMTLQKTLTALFNNIITGLAMYGISMSLAYAGYIGQDYDSNYDWCDPRFCCPPKTEV* |
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