Scaffold Ga0114975_10000336

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10000336
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35299
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008808	Metagenome	327	Y
F012001	Metagenome / Metatranscriptome	284	Y
F014237	Metagenome	264	Y
F041080	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000033611	F014237	AGAAGG	MDTLKSVLMRIFAVIAAESLGVIGAGSLVGIEVWQAGVLAGALGAAQVLEALARFYLADGHLSAEEINQAFAKVDKKAVE*
Ga0114975_1000033613	F012001	AGGAG	MFDVEKAKQVLLSYLRAAAASMVALYTAGQHDPKILASAFVAGFVGPVLKALDKSAPEFGKGSK*
Ga0114975_1000033620	F008808	AGAAGG	MINRDECPECNVKFNNVFEATDHLLEEDEEFDPALILPNGYRLMIGSLLRCMYRYAEQPEQIKKIAQDTYMTLFVAETDPDIVMETIEDMIVESSVMGLDDELKKLLEGGA*
Ga0114975_1000033629	F041080	GAGG	MSSNTILNLAEELRVIADEIELNASSSSDYPVRGTIVKAKPEQNRFKPKSIWVSLGNGQYKHLTGTKGLIATHERLDGFVDVVFEA*