Scaffold Ga0114975_10000054

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10000054
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72957
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (71.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F006506	Metagenome / Metatranscriptome	371	Y
F054873	Metagenome	139	Y
F064710	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_10000054105	F064710	AGGA	MSETITTKDKLTSLMLQMQDIIMEDYEDNEDIQNAFNALASAFDYYIED*
Ga0114975_1000005462	F054873	GAGG	MRAREFTINVPITIKINGDGDPEIDMPGADDPKDPSELDPDPVMVPPLQQDVELKKAEAGKVSPVINNLTQDETEPEEKQNPMFR*
Ga0114975_1000005467	F006506	N/A	MLAVVGLTGCASIVDMIPSKWDANQAKVITDIQVQTNHFDCRGDQAQQLKSLALNVEWFDTYAKTKPTKDIAKLTGTITNTVNEYQDRLKTGPVSPMYCDIKIKIIKQQADVLAKTTQGRF*
Ga0114975_1000005488	F002869	GGAG	MNNEITTAMLDRTIQWCEQNTLWGKGSAIQRMQDFYFEQTRTSVNEDWPESFTLQELATALGEDPVRYRIYYSRDNLTLRLFVFRPHCVWDEQKTMLDLGFVVAQDGDTDNIPNQPAEGVEE*