Scaffold Ga0114975

Basic Information
Taxon OID	3300009164 Open in IMG/M
Scaffold ID	Ga0114975_10000037 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009164 Open in IMG/M

Scaffold ID

Ga0114975_10000037 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	88473
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (12.22%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

88473

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (12.22%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041487	Metagenome / Metatranscriptome	160	Y
F044795	Metagenome / Metatranscriptome	154	Y
F062766	Metagenome	130	Y
F078921	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000003721	F044795	AGGA	VKKKLTNHPNLRDSNEQLYFVYLTEIGYDCDKPIKEFLKDMSNRTIPYIDVFGRASRKVQEEHPHLRGKTWQKRKNKKEPEIRQEIRDLS*
Ga0114975_1000003766	F062766	N/A	MTANEMADALDQKLDRVDSFASAGYEDFDYSSVLTEAYHFYVKKFIDEMNNRKGKGFQETEIRDQGLGALIKTAPALTVSASQVGIYTNGKFFDLPMDHMYTVFEECTIDKKDCNTQEFIKAYIRVIAYNEIQQFQSSKYKKPFYKTYGDARVWRAEYSRLISGVNPASPATAKRHEIITDGTFNVSTYYMRYLKNPTAIVVDRDTPANQVNCELDYSTHVVIVDIATDLMLERVKEQKLQIRESFKDLE*
Ga0114975_1000003767	F041487	N/A	METAEKEKVAYGSFLQDRIVAVKPVESSGKWNTLLVAGQDRSKDPFMYNKTKRSYQVPLNNANLGGGVKSILDDQRRVKIQKYMESFPNGMTQKEFFEKELGVDLNPYAPQDTNFWRTDKRGRVALSKEGTSLNLNLPLDMLKYLILLSNKMLICPSYDDRKLKATYEFMMVDESRVTTKKLEEAGVKSQAYIKFAEVTNSKKTTIGFIKSLGRTIPVSATEDWMKNEVLSVVEKDPKFFLEIVNHPQYNERIFVQEAVEAGAIIRKGEKRYTLDNGAELGEITDVINYLLNPDNQEVKLRIKAKIELAQKK*
Ga0114975_1000003778	F078921	N/A	MFNRNKKGRKMVVVYLDTKDSILLKSNDRTFHVLYWVLKQANFETNLWYADKINKTYIMNKLGISAPGLDKHIASLKERGFIIPAEVRGRYRINLELLST*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114975_10000037

Overview

Ecosystem & Geography

Associated Families

Sequences