Scaffold Ga0114970_10262686

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10262686
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 994
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041193	Metagenome	160	N
F052596	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_102626861	F041193	N/A	LIRLIIITLLLNLTAYSQSLIINNKDTLICFSSDKAKFLAKQYHKAEAYYLSDSLCQQQLIFKANQVNLYKKNEDKLQTIIGNQVTIIKYKDEENKSLTIQMKGLNLEVKKQKRLKGISIIFGVSCLVFTLVK*
Ga0114970_102626863	F052596	N/A	YEKFKQIIDLQIAHNKRSDELYALKIDLLETFDEITRANDLLWAEVLTENGDYHLCYYLYEMNGMYGTPDLNEEYKDIKELYDYLIENKGFK*