Scaffold Ga0114970_10237752

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10237752
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1058
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026867	Metagenome	196	Y
F043823	Metagenome	155	N
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_102377521	F048834	N/A	RRRVAIPSVDWAAALDAYVAGDREEVVPPGWFTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKICNRGSKVGHCRRVPHYRLTPVKAGKN*
Ga0114970_102377522	F043823	N/A	MKKVKTNLTIDPKVKRKGELMARKSGLSLSAYITTLLVKELDKQKKR*
Ga0114970_102377523	F026867	GAG	MSLGRLNDIAMKLRQQNQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDQWRMIRTTGLSSLHREDRLRSAVGKARELKSRSDSRVSWRQIENSLKAAVSSLGLPEG