Scaffold Ga0114970_10038401

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10038401
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3150
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015867	Metagenome / Metatranscriptome	251	N
F018713	Metagenome	233	N
F043930	Metagenome	155	N
F058129	Metagenome	135	N
F088880	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1003840110	F018713	AGAAG	MSPDIDLIHKIPQEVKDAAILLGNYFKKQGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVSEGSDMETIICGLENSKKQFPNECGDGIDYTKSF*
Ga0114970_100384013	F088880	N/A	MRIHTKNTAFIAMFVLVIICAIAWGLYIRSTNNTIKVIDGCQYLKNYNGHGWNLTHKGNCTNTIHYKK*
Ga0114970_100384015	F058129	N/A	MKVYLVYNNSDRDGGVNAIFDTDRKALDFVIKEYYSAPYFESMDSYSLDKLAREYVVEMKVL*
Ga0114970_100384016	F043930	GAG	MNKLEKARWRNILRKAAKANRLFKKGYLVFDHHGIRFEGFKFENGLLYEGSENYRSIWISKDKPWSQHLQTPIKEFNAKRFDKWTAVHPKDIKKI*
Ga0114970_100384019	F015867	GAG	MKYKVTYYDYDSDNYLTKELYWMASYRGSFDFVPVSDGPKENWKGFSISGSGVNVFYNDKGLNITVDGFQEMKSGGYGKTTTLIQSAN*