Scaffold Ga0114970_10019503

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10019503
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4605
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011078	Metagenome / Metatranscriptome	295	N
F057195	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1001950313	F057195	N/A	MRVIQSGHLGDLIYSLTATKRVAELHGAVDFHIGFREQNTVSGHPSGGYCMNLKSYEYIKPLLEHQSYIKSVEMNSHPDIKYNFDKFRNHGLNLSAGDLRRNHFLMYPELMSDLYEPCIEATEPIPYFADKILLNFTSRYRNYDINYFPLKEHKCVFFGYEDEYIAFTDRWQLDCELLKCQDALMLATIIGSSKAFIGN
Ga0114970_100195033	F011078	N/A	VNKAEIIEELARADWLTKATRNIAKNNELARELYQFYFLTILQKPDEQIEKIYNDGYIQFWTIRLLYLCINGNRHPFGESRIYDQYDVYDLHLSEEPDLLLEREEDEKIEQKRINKINQVTEEAYFYERELFKLWCSGMSARAIHRQTDISVREILRVVKLMKERCTTK*