Scaffold Ga0114970_10015437

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10015437
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5247
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F086598	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_100154375	F002227	AGCAG	MKLTIQSKQNAQTIVDLFNAILTGEEQESGATPLSIYDDNKHICSLVAKDGTQILELIIEREEGDKLCPGTPDSEVL*
Ga0114970_100154377	F001964	GGAGG	MSRNLFGKPLYKVQISGAIGWSDLKERVVKFETVEFSSRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDVYPVVERMSEKPKQI*
Ga0114970_100154379	F086598	N/A	METEKIVQLTDNLLRLAAMVKRVSESVDRIEKTLKQHDRKIQQALEQSSQSERNSADDAWEGFGPKPEQQPFNPNAETYTLEVSYGPQTIRRDDDDDDETWANRKKLLMNRRVSFLNSSGVVGTPEQEAYLKEIYDRLTAHGR*